********** MODEL NAME OPO-scCro-Bgal ********** MODEL NOTES MMmbpHD:Users:mmossing:Documents:MATLAB:work:opobgalsimparams060713.xls Reaction Object Array 1 DNA -> DNA + mRNA k1 1.000 2 mRNA -> mRNA + Cro k2 2.000 3 mRNA -> mRNA + bgal k2a 2.000 4 Cro + Cro <-> Cro2 k3 0.004 k3r 29.297 5 DNA + Cro2 <-> DNACro2 k4 56.832 k4r 4.385 6 mRNA -> null k5 0.130 7 Cro -> null k7 0.026 8 bgal -> null k7a 0.011 ********** MODEL STATES d/dt(mRNA) = R1-R6 %trx - deg d/dt(Bgal) = R2a-R8 %trlBgal - deg d/dt(Cro2) = R2-R5+R9-R7 %trl - DNAbind + DNAdis - deg d/dt(OPO) = R9-R5 %DNAdis - DNAbind d/dt(OPOCro2) = R5-R9 %DNAbind - DNAdis mRNA(0) = 0 Bgal(0) = 0 Cro2(0) = 0 OPO(0) = 1 OPOCro2(0) = 0 ********** MODEL PARAMETERS k1 = 1 %trx k2 = 2 %trlCro k2a = 2 %trlBgal k4 = 56.8 %DNAbind k4r = 4.38 %DNAdis k6 = 0.13 %deg mRNA k7 = 0.0259 %deg Cro k8 = 0.0108 %deg Bgal ********** MODEL VARIABLES ********** MODEL REACTIONS R1 = k1*OPO %trx R2 = k2*mRNA %trl Cro R2a = k2a*mRNA %trl Bgal R5 = k4*Cro2*OPO %DNAbind R6 = k6*mRNA %deg R7 = k7*Cro2 %deg R8 = k8*Bgal %deg R9 = k4r*OPOCro2 ********** MODEL FUNCTIONS ********** MODEL EVENTS ********** MODEL MATLAB FUNCTIONS